Free Downloads: Microarray

During this recent decade, microarray-based single nucleotide polymorphism (SNP) data are becoming more widely used as markers for linkage analysis in the identification of loci for disease-associated genes.

During this recent decade, Microarray-based single nucleotide polymorphism (SNP) data are becoming more widely used as markers for linkage analysis in the identification of loci for disease-associated genes. Although Microarray-based SNP analyses have markedly reduced genotyping time and cost compared with microsatellite-based analyses, applying these enormous data to linkage...

Category: Software Development / Misc. Programming
Publisher: BioMed Central Ltd, License: Freeware, Price: USD $0.00, File Size: 1.2 MB
Platform: Windows

ArrayNorm is an platform-independent Java tool for normalization and statistical analysis for microarray-experiment data.

ArrayNorm is an platform-independent Java tool for normalization and statistical analysis for Microarray-experiment data. It provides modules for visualization (scatterplot, histogram, boxplot, etc.), normalization and analysis. The user can upload any number of Microarray-datasets, resulting from one experiment. According to experimental design and relationships between the...

Category: Business & Finance / Applications
Publisher: Institute of Genomics and Bioinformatics, TU Graz, License: Freeware, Price: USD $0.00, File Size: 61.6 MB
Platform: Windows

ErmineJ performs analyses of gene sets in expression microarray data or other genome-wide data that results in rankings of genes.

ErmineJ performs analyses of gene sets in expression Microarray data or other genome-wide data that results in rankings of genes. A typical goal is to determine whether particular biological pathways are "doing something interesting" in the data. The software is designed to be used by biologists with little or no informatics background. A command-line interface is available for...

Category: Utilities / Misc. Utilities
Publisher: bioinformatics, License: Shareware, Price: USD $0.00, File Size: 0
Platform: Windows

ResqMi is a new tool for analyzing, viualizing and editing Resequencing Microarray data.

ResqMi is a new tool for analyzing, viualizing and editing Resequencing Microarray data. ResqMi is free software.

Today, a new version of ResqMi is released. We have reworked several core structures including file parsers to be more efficient and portable. ResqMi furthermore features new visualization and export tools for CHP and CEL files, including an in-detail array...

Category: Business & Finance / Business Finance
Publisher: pas, License: Freeware, Price: USD $0.00, File Size: 7.8 MB
Platform: Windows

The QC Chart Tool is an optional desktop application that accumulates, aggregates and analyzes summary statistics from Feature Extraction output files and optional annotation files for the purpose of monitoring microarray processing performance.

The QC Chart Tool is an optional desktop application that accumulates, aggregates and analyzes summary statistics from Feature Extraction output files and optional annotation files for the purpose of monitoring Microarray processing performance. Metric sets and thresholds can be generated using the QC Chart Tool and appropriate representative data for your experimental conditions.

Category: Utilities / Misc. Utilities
Publisher: Agilent, License: Freeware, Price: USD $0.00, File Size: 33.0 MB
Platform: Windows

SpotSuite is the core application package for SpotBot, with its two primary programs, SpotApp and SpocleGen.

SpotSuite is the core application package for SpotBot, with its two primary programs, SpotApp and SpocleGen. These files contain instructions in Spot Control Language (SpoCLe), a scripting language for printing microarrays.
SpotBot is the new standard for personal Microarray printing , utilizing advanced micro-robotics to ensure accuracy, ease-of-operation and affordability.

Category: Utilities / Misc. Utilities
Publisher: SpotSupport, License: Freeware, Price: USD $0.00, File Size: 10.4 MB
Platform: Windows

An expressed sequence tag or EST is a short sub-sequence of a cDNA (complementary DNA) sequence.

An expressed sequence tag or EST is a short sub-sequence of a cDNA (complementary DNA) sequence. HarvEST is principally EST database-viewing software that emphasizes gene function and is oriented to comparative genomics and the design of oligonucleotides, in support of activities such as SNPs, Microarray content design, function annotation, and physical and genetic mapping.

Category: Home & Education / Science
Publisher: Steve Wanamaker and Timothy Close, License: Freeware, Price: USD $0.00, File Size: 520.8 MB
Platform: Windows

Agilent's GeneSpring GX software provides powerful, accessible statistical tools for fast visualization and analysis of transcriptomics, genomics, proteomics and metabolomics data.

Agilent's GeneSpring GX software provides powerful, accessible statistical tools for fast visualization and analysis of transcriptomics, genomics, proteomics and metabolomics data. Designed specifically for the needs of biologists, GeneSpring GX offers an interactive desktop computing environment that promotes investigation and enables understanding of Microarray data within a...

Category: Utilities / Misc. Utilities
Publisher: Strand Life Sciences Pvt Ltd, License: Shareware, Price: USD $299.00, File Size: 2.0 MB
Platform: Windows

Vector Xpression™ is proven software with a comprehensive set of peer-reviewed gene expression analysis tools in a vivid, graphically rich interface.

Vector Xpression™ is proven software with a comprehensive set of peer-reviewed gene expression analysis tools in a vivid, graphically rich interface. Vector Xpression™ will help you find the meaning in your Microarray data, regardless of your statistics or computer expertise.

Category: Business & Finance / Business Finance
Publisher: Infomax, License: Demo, Price: USD $0.00, File Size: 54.6 MB
Platform: Windows

PICKY is a software tool for selecting optimal oligonucleotides (oligos).

PICKY is a software tool for selecting optimal oligonucleotides (oligos). PICKY allows the rapid and efficient determination of gene-specific oligos based on given gene sets, and can be used for large, complex genomes such as human, mouse, or maize. PICKY can also be used to analyze existing Microarray probes and evaluate their design quality. Because PICKY uses rigorous whole...

Category: Software Development / Misc. Programming
Publisher: Complex Computation Lab Iowa State University, License: Demo, Price: USD $0.00, File Size: 1.6 MB
Platform: Windows

This program visualizes pathways. The user can display any kind of quantitative data from gene and protein experiments directly within the pathways (colours represent the value). Automatic pathway update from KEGG, BioCarta and GenMAPP.

This freeware program visualizes pathways (KEGG, BioCarta, GenMAPP, ...). The user has the possibility to display any kind of quantitative data from gene and protein experiments directly within the pathways (colours represent the value). The linking between the pathway items and the experiment data is done over the gene or protein names and their accession numbers. Furthermore the user has a...

Category: Home & Education
Publisher: GSA, License: Freeware, Price: USD $0.00, File Size: 1.8 MB
Platform: Windows

Feature rich and user friendly application for analysing array-experiments (e.g. from provider Affymetrix). It includes additional gene information, multiple analysis methods, automatic pathway mapping with an editor, function prediction...

Genom 2005 is a feature rich and user friendly application for analysing array-experiments (e.g. from provider Affymetrix). It includes normalisation of raw data, additional gene information official gene names, location, function prediction, sequences, database references (GeneOntology, InterPro, SwissPROT ,ENSEMBL, GeneBank...), multiple analysis methods (cluster, Support-Vector-Machine,...

Category: Home & Education
Publisher: GSA, License: Demo, Price: USD $1049.00, File Size: 2.0 MB
Platform: Windows