Free Downloads: Bioinformatics

Bio Browser is a desktop application which facilitates the searching and browsing of the Cancer Bioinformatics Infrastructure Objects (caBIO) domain model made available via a web service from the National Cancer Institute Centre for Bioinformatics (

Bio Browser is a desktop application which facilitates the searching and browsing of the Cancer Bioinformatics Infrastructure Objects (caBIO) domain model made available via a web service from the National Cancer Institute Centre for Bioinformatics (NCICB).

Category: Internet / Browsers
Publisher: Jonny Wray, License: Freeware, Price: USD $0.00, File Size: 2.9 KB
Platform: Windows

With this free Java software you can:
- Use latest bioinformatics tools with an intuitive user interface
- Compare proteins by sequence and 3D-similarity
- Search protein databases
- Publish protein alignments online

GATC Viewer for raw data from ABI 3730 xl (Sanger sequencing).

GATC Viewer for raw data from ABI 3730 xl (Sanger sequencing).This program allows you to display chromatograms in .abi format.
DNA sequencing service, Next Generation sequencing, Bioinformatics services and sequencing analysis software.European leaders in DNA sequencing and Bioinformatics

Category: Business & Finance / Business Finance
Publisher: GATC Biotech AG, License: Freeware, Price: USD $0.00, File Size: 1.8 MB
Platform: Windows

Mussa is a bioinformatics tool for finding and visualizing regions of conserved DNA by comparing across several species.

Mussa is a Bioinformatics tool for finding and visualizing regions of conserved DNA by comparing across several species. It has been found that conserved regions are frequently enriched for regions that are functionally important. Thus Mussa is a tool to help discover previously unknown functional DNA elements.

Category: Internet / Misc. Plugins
Publisher: Wold Lab - Caltech, License: Freeware, Price: USD $0.00, File Size: 12.6 MB
Platform: Windows

GenGIS is a bioinformatics application that allows users to combine digital map data with information about biological sequences collected from the environment.

GenGIS is a Bioinformatics application that allows users to combine digital map data with information about biological sequences collected from the environment. GenGIS provides a 3D graphical interface in which the user can navigate and explore the data, as well as a Python interface that allows easy scripting of statistical analyses using the Rpy libraries.

Category: Multimedia & Design / Multimedia App's
Publisher: Robert Beiko, License: Freeware, Price: USD $0.00, File Size: 26.2 MB
Platform: Windows

CLC Sequence Viewer creates a software environment enabling users to make a large number of bioinformatics analyses.

CLC Sequence Viewer creates a software environment enabling users to make a large number of Bioinformatics analyses.CLC Sequence Viewer is very versatile when it comes to importing and exporting both data and graphics files.The application has smooth data management,excellent graphical viewing and output options.

Category: Multimedia & Design / Digital Media Editors
Publisher: CLC bio A/S, License: Freeware, Price: USD $0.00, File Size: 41.1 MB
Platform: Windows

pIcarver is a tool to visualize theoretical distributions of peptide pI on a given pH range, and proposes a fractionation scheme that generates fractions with similar peptide frequencies.

pIcarver is a tool to visualize theoretical distributions of peptide pI on a given pH range, and proposes a fractionation scheme that generates fractions with similar peptide frequencies. This tool has been developed as a service of the Bioinformatics Core Facility, within a collaboration between the Proteome Informatics Group from the Swiss Institute of Bioinformatics (SIB) and...

Category: Home & Education / Miscellaneous
Publisher: Proteome Informatics Group (Swiss Institute of Bioinformatics), License: Freeware, Price: USD $0.00, File Size: 1.3 KB
Platform: Windows

Avogadro is an advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.

Avogadro is an advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, Bioinformatics, materials science, and related areas. It offers flexible high quality rendering and a powerful plugin architecture.

Category: Home & Education / Science
Publisher: Avogadro, License: Shareware, Price: USD $0.00, File Size: 9.5 MB
Platform: Windows

Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data.

Cytoscape is an open source Bioinformatics software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data.
Although Cytoscape was originally designed for biological research, now it is a general platform for complex network analysis and visualization.

Category: Business & Finance / Applications
Publisher: Cytoscape Consortium, License: Freeware, Price: USD $0.00, File Size: 87.2 MB
Platform: Windows

The CLC RNA Workbench gives the user easy access to a range of complex algorithms and options.

The CLC RNA Workbench gives the user easy access to a range of complex algorithms and options. RNA secondary structures can be predicted using state-of-the-art free energy minimization algorithms. CLC RNA Workbench is available on Windows, Mac OS X, and Linux platforms.
Features:
-Secondary structure prediction
-Graphical view and editing of secondary structure
-Tabular...

Category: Home & Education / Science
Publisher: CLC bio A/S, License: Shareware, Price: USD $490.00, File Size: 52.5 MB
Platform: Windows

BioSeqAnalyzer is a bioinformatics software tool for analyzing DNA and protein sequences. It runs under Microsoft Windows and provides a graphical user interface, making sequence analysis extremely easy.

BioSeqAnalyzer is a Bioinformatics software tool for analyzing DNA and protein sequences. Its Windows interface makes sequence analysis extremely easy. BioSeqAnalyzer, registered version, supports the following operations: Alignment Scoring. Linear global alignment. Affine global alignment. Local alignment. Multiple alignment. Hidden...

Category: Home & Education
Publisher: BioSeqAnalyzer, License: Shareware, Price: USD $30.00, File Size: 566.9 KB
Platform: Windows

Infer.

Infer.NET is a framework for running Bayesian inference in graphical models. It can also be used for probabilistic programming as shown in this video. You can use Infer.NET to solve many different kinds of machine learning problems, from standard problems like classification or clustering through to customised solutions to domain-specific problems. Infer.NET has been used in a wide variety of...

Category: Utilities / Misc. Utilities
Publisher: Microsoft Research, License: Shareware, Price: USD $0.00, File Size: 33.4 MB
Platform: Windows

Antimony is a text-based model definition language originally based on Jarnac, and extended to be fully modular.

Antimony is a text-based model definition language originally based on Jarnac, and extended to be fully modular. Antimony models can be converted to and from SBML, flattening the modularity in the process. See also: Features of the Antimony language. For more information and to reference Antimony, see our article in Bioinformatics. If this page doesn't link to what you need, try the...

Category: Business & Finance / Business Finance
Publisher: Lucian Smith, License: Freeware, Price: USD $0.00, File Size: 5.6 MB
Platform: Windows

This program visualizes pathways. The user can display any kind of quantitative data from gene and protein experiments directly within the pathways (colours represent the value). Automatic pathway update from KEGG, BioCarta and GenMAPP.

This freeware program visualizes pathways (KEGG, BioCarta, GenMAPP, ...). The user has the possibility to display any kind of quantitative data from gene and protein experiments directly within the pathways (colours represent the value). The linking between the pathway items and the experiment data is done over the gene or protein names and their accession numbers. Furthermore the user has a...

Category: Home & Education
Publisher: GSA, License: Freeware, Price: USD $0.00, File Size: 1.8 MB
Platform: Windows

DAMBE is a versatile software workbench for laboratories doing research in molecular biology and evolution.

DAMBE is a versatile software workbench for laboratories doing research in molecular biology and evolution.
Features:
Sequence alignment
¨ General sequence alignment with nucleotide and amino acid sequences
¨ Aligning protein-coding nucleotide sequences against aligned amino acid sequences


Bioinformatics tools
¨ Position...

Category: Home & Education / Miscellaneous
Publisher: Xuhua Xia, License: Freeware, Price: USD $0.00, File Size: 9.4 MB
Platform: Windows

DNADynamo sequence analysis software is easy to use.

DNADynamo sequence analysis software is easy to use. It's user interface is focused on your DNA sequences, proteins and restriction enzyme sites. Sequencing data, oligonucleotide sequences, DNA/Protein annotations and notes can be added to each sequence. Information is accessible whenever it is needed.

The more you use the software the more useful your sequence files become...

Category: Business & Finance / Business Finance
Publisher: BlueTractorSoftware Ltd, License: Shareware, Price: USD $169.00, File Size: 9.5 MB
Platform: Windows

The "Molecular Conceptor Learning Series" is an innovative, computer-based learning solution that aims to bring together, in a ready-digested format, knowledge of medicinal chemistry, drug design, cheminformatics, structural bioinformatics

The "Molecular Conceptor Learning Series" is an innovative, computer-based learning solution that aims to bring together, in a ready-digested format, knowledge of medicinal chemistry, drug design, cheminformatics, structural Bioinformatics and molecular modeling, necessary to the skills, techniques and approaches used by a drug discovery team as a whole. It provides all the...

Category: Home & Education / Science
Publisher: Synergix Ltd., License: Shareware, Price: USD $900.00, File Size: 38.5 MB
Platform: Windows

HyperProtein is Hypercube, Inc.

HyperProtein is Hypercube, Inc.'s new product focusing on the computational science associated with protein sequences. The product includes the analysis of one-dimensional protein sequences as well as the analysis of consequent three-dimensional protein structures. In particular, the relationship between sequence and structure is a fundamental facet of the product. Unlike individual...

Category: Multimedia & Design / Multimedia App's
Publisher: Hypercube, Inc., License: Shareware, Price: USD $1495.00, File Size: 43.1 MB
Platform: Windows

The easy-to-use data post-processing software for visualization, data reduction, data mining and building predictive models from protein profiling data using Bruker’s MALDI-TOF mass spectrometers.

The easy-to-use data post-processing software for visualization, data reduction, data mining and building predictive models from protein profiling data using Bruker’s MALDI-TOF mass spectrometers. Supervised classification model generation and validation using different sophisticated mathematical and bioinformatic algorithms. ClinProTools combines intuitive visualization features and...

Category: Home & Education / Science
Publisher: Bruker Daltonik GmbH, License: Shareware, Price: USD $0.00, File Size: 0
Platform: Windows